Covid19

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

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4 years ago

Programming Language

Jupyter Notebook

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Data Processing > Jupyter Notebook

Science > Ngs

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Alternatives To Covid19

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Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 5 months ago

Fastp ⭐ 1,602

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.

total releases 1most recent commit 7 months ago

Gatk ⭐ 1,576

Official code repository for GATK versions 4 and up

dependent packages 2total releases 46most recent commit a month ago

Ngs ⭐ 1,252

Next Generation Shell (NGS)

most recent commit 3 months ago

Galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 23total releases 30most recent commit 3 months ago

Sra Tools ⭐ 1,015

SRA Tools

total releases 1most recent commit 3 months ago

Htslib ⭐ 762

C library for high-throughput sequencing data formats

dependent packages 1total releases 11most recent commit a month ago

Deeptools ⭐ 644

Tools to process and analyze deep sequencing data.

most recent commit 19 days ago

Awesome Omics ⭐ 536

A collection of awesome things regarding all omics.

most recent commit 3 months ago

Jvarkit ⭐ 440

Java utilities for Bioinformatics

most recent commit 6 months ago

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