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Covid 19 Data ⭐ 5,617

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

Awesome Coronavirus ⭐ 1,537

🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)

Covid19_scenarios ⭐ 1,380

Models of COVID-19 outbreak trajectories and hospital demand

Covid Net ⭐ 1,129

COVID-Net Open Source Initiative

Coronavirus ⭐ 1,108

Folding@home COVID-19 efforts

🫁 The world's first open-source ventilator tested on human patients. Mass-producible at a low cost (~2000€).

Seirsplus ⭐ 571

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Ncov2019 ⭐ 424

query stats of infected coronavirus cases

Covariants ⭐ 310

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

Open Source Covid 19 ⭐ 230

A global collection of Open Source projects during COVID-19

Serratus ⭐ 219

Ultra-deep search for novel viruses

Nextclade ⭐ 190

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Covid 19_unified Dataset ⭐ 168

Unified COVID-19 Dataset

Covid 19 Impfungen_in_deutschland ⭐ 166

Gemäß Impfverordnung sind alle Impfdaten täglich dem Robert Koch Institut (RKI) zu melden. Die Impfkampagne wurde in ihrem Verlauf um immer weitere Leistungserbringer erweitert, für die mehrere Meldeportale eingerichtet wurden, die in diesem Dokument beschrieben werden.

PyRoss: inference, forecasts, and optimised control of epidemiological models in Python

Covid 19 Detection Flask App Based On Chest X Rays And Ct Scans ⭐ 121

COVID-19 Detection Chest X-rays and CT scans: COVID-19 Detection based on Chest X-rays and CT Scans using four Transfer Learning algorithms: VGG16, ResNet50, InceptionV3, Xception. The models were trained for 500 epochs on around 1000 Chest X-rays and around 750 CT Scan images on Google Colab GPU. A Flask App was later developed wherein user can upload Chest X-rays or CT Scans and get the output of possibility of COVID infection.

Covid19 Review ⭐ 117

A collaborative review of the emerging COVID-19 literature. Join the chat here:

Covidnet Ct ⭐ 108

COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT

Viralrecon ⭐ 101

Assembly and intrahost/low-frequency variant calling for viral samples

Sars Cov 2_variant Reports ⭐ 96

Informal summaries of notable SARS-CoV-2 lineages

Covid19 Eu Data ⭐ 80

Automated Data Collection: COVID-19/SARS-COV-2 Cases in EU by Country, State/Province/Local Authorities, and Date

Covid 19 Hospitalisierungen_in_deutschland ⭐ 77

Im Datensatz 'COVID-19-Hospitalisierungen' werden die aktuellen Zahlen der nach den Vorgaben des Infektionsschutzgesetzes - IfSG - erfassten hospitalisierten COVID-19-Fälle bereitgestellt.

Sars Cov 2 Infektionen_in_deutschland_archiv ⭐ 76

Der vorliegende Datansatz enthält umfassende Informationen zu SARS-CoV-2-Infektionen in Deutschland, die gemäß dem Infektionsschutzgesetze (IfSG) von den Gesundheitsämtern an das Robert Koch-Institut (RKI) gemeldet wurden. Die Daten umfassen Informationen zur Anzahl der bestätigten Fälle, Todesfälle und Genesungen.

Sars Cov 2 Nowcasting_und_ R Schaetzung ⭐ 75

Das Nowcasting erstellt eine Schätzung des Verlaufs der Anzahl von bereits erfolgten SARS-CoV-2-Erkrankungsfällen in Deutschland unter Berücksichtigung des Diagnose-, Melde- und Übermittlungsverzugs.

Sars Cov 2 Sequenzdaten_aus_deutschland ⭐ 67

Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermitteln.

Covid 19 ⭐ 62

COVID-19 infectious forecasting using SEIR model and R0 estimation

Programmatically interact with the GISAID database.

Covid 19 Rna Seq Datasets ⭐ 61

A repository for sharing information on available COVID-19 RNA-Seq datasets

Bioexplorer ⭐ 61

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

Cov Spectrum Website ⭐ 54

A web platform to detect and analyze variants of SARS-CoV-2

Covid 19 Malaysia ⭐ 50

Malaysia COVID-19 dataset by country, states and clusters.

Phes Odm ⭐ 47

The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.

Covid19 Brazil Timeseries ⭐ 45

Data collection to analyze the dissemination of COVID-19 through Brazilian states. Contributions are welcome.

Covid19_scenarios_data ⭐ 41

Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

Covid19.analytics ⭐ 34

R package to obtain and analyze live data from the nCOVID19 coronavirus

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

Covid19cuba App ⭐ 32

Mobile application of Covid19 Cuba Data project implemented with Flutter

Covid 19_ampel ⭐ 30

Covid-19_Ampel | Zeigt neben der 7-Tage-Inzidenz weitere Infos zu einer Region.

Jaukerl Ooe ⭐ 29

Overview page for all COVID vaccination appointments in Upper Austria. 💉

Covid 19 Notebooks ⭐ 29

Data analysis of the COVID-19 outbreak in Italy updated daily from official sources

Estimativas de R(t) por Estados do Brasil

Taiwan Covid 19 ⭐ 27

Analysis and visualization of Taiwan’s COVID-19 data

Sars2 Stat Kr ⭐ 26

중국 우한 바이러스 한국 확진자 통계

Covid 19api ⭐ 26

MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store

Sars Cov 2 Infektionen_in_deutschland ⭐ 20

Der vorliegende Datansatz enthält umfassende Informationen zu SARS-CoV-2-Infektionen in Deutschland, die gemäß dem Infektionsschutzgesetze (IfSG) von den Gesundheitsämtern an das Robert Koch-Institut (RKI) gemeldet wurden. Die Daten umfassen Informationen zur Anzahl der bestätigten Fälle, Todesfälle und Genesungen.

Coronavirus ⭐ 20

Java API Wrapper for tracking coronavirus (COVID-19, SARS-CoV-2) via https://git.io/Jvoep

Pyncov 19 ⭐ 20

Flexible mechanistic epidemiological model to learn and predict the spread of COVID-19

CIDO: Coronavirus Infectious Disease Ontology

Covid 19 Prediction ⭐ 19

[IoT '20] Predicting the Growth and Trend of COVID-19 Pandemic using Machine Learning and Cloud Computing

Coronavirus Dresden ⭐ 19

Collects official SARS-CoV-2 infection statistics published by the city of Dresden.

Covid19 Taiwan ⭐ 19

Release COVID-19 (SARS-CoV-2) FDA / NHI drugs screening results.

Scraping world-wide data about COVID-19

Ncov2019 ⭐ 18

🦠 Exploring COVID-19 data

Covid 19 Ai ⭐ 16

Collection of AI resources to fight against Coronavirus (COVID-19)

Anomalydetect ⭐ 16

Detects anomalous resting heart rate from smartwatch data.

Sars Ani ⭐ 16

This is the raw data and code repository of the SARS-ANI project on SARS-CoV-2 events in animals.

Covigator Ngs Pipeline ⭐ 15

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

Sars_cov_2 ⭐ 15

Bioinformatics analysis of SARS-CoV-2

Cli Corona ⭐ 15

📈 Track COVID-19 (2019 novel Coronavirus) statistics via the command line.

Helix Covid19db ⭐ 15

Helix® COVID-19 Surveillance

Collection of links and information about COVID-19

Sars Cov 2 ⭐ 14

Covid19 UI | Local Data Tracker & Compare the number of deaths in Countries

Sars Cov 2_b.1.1.529_spike Rbd_predictions ⭐ 14

AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions

Corona_tracker ⭐ 13

COVID-19 tracking app - submission for https://wirvsvirushackathon.org/

Covid19cuba Action ⭐ 13

GitHub Action of Covid19 Cuba Data project implemented in Python

SARS-CoV-2 Genome Assembler

Covid19 Lab Results ⭐ 11

Parsing lab results pertaining to SARS-CoV-2 (causes COVID-19) and other respiratory viruses

Covigator ⭐ 11

CoVigator - Monitoring SARS-CoV-2 mutations

A set of "real-time" covid19 county-level dashboards w/ national and state choropleths for monitoring localized infection resurgences as distancing, testing and tracing measures evolve.

Sars Cov 2 Queries ⭐ 10

Wikidata Queries around the SARS-CoV-2 virus and pandemic

Coronavirus ⭐ 9

COVID-19 Coronavirus Data Tracker

Coronavirus (SARS-Cov-2) sequencing analysis

Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.

LabHive - We align efforts for more SARS-CoV-2 tests by connecting research laboratories, diagnostic centers and volunteers.

Vaxdesign ⭐ 9

A script that computationally designs a vaccine

Coronavirus Dresden Data ⭐ 8

SARS-CoV-2 infection data (from the official dashboard) published by the city of Dresden

Covid 19_7 Tage Inzidenz_in_deutschland ⭐ 8

Im Datensatz werden die aktuellen 7-Tage-Inzidenzen der nach den Vorgaben des Infektionsschutzgesetzes - IfSG - an das RKI übermittelten COVID-19-Fälle veröffentlicht. Datengrundlage zur Berechnung der 7-Tage-Inzidenzen sind die an das RKI übermittelten COVID-19-Fälle.

Info/Data (global/italy) about COVID-19. PR welcome for other countries.

Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

Iccas Dataset ⭐ 7

[EN] Italian Coronavirus Cases by Age group and Sex (ICCAS) Dataset. | [IT] Dati dell'ISS sul numero di casi/morti di coronavirus in Italia disaggregati per fascia d'età e sesso.

Covid19rj ⭐ 7

Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.

Sars Cov 2 Variants ⭐ 7

This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.

Intensivkapazitaeten_und_covid 19 Intensivbettenbelegung_in_deutschland ⭐ 7

Das Intensivregister (www.intensivregister.de) ist eine digitale Plattform zur Echtzeiterfassung von intensivmedizinischen Behandlungs- und Bettenkapazitäten sowie den Fallzahlen intensivmedizinisch behandelter COVID-19-Patient*innen der etwa 1.300 Akut-Krankenhäuser Deutschlands.

A set of configurable tools around COVID-19 data

Covid Drdb Payload ⭐ 6

A relational database of SARS-CoV-2 resistance data.

Covid19 Vis ⭐ 6

Visualizing the impact of SARS-CoV-2 intervention strategies.

CoV-Seq: COVID-19 Genomic Sequence Database and Visualization

This repo contains the source code KenyaCoV, a simulation package for forecasting SARS-CoV-2 transmission in Kenya.

Covidm Mtd Omi ⭐ 6

Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).

Code Distancing ⭐ 6

Keep your code safe from COVID-19 by staying 6 line breaks apart.

Covid19 Eu Data Api ⭐ 6

Corona Datenspende_teildatensatz_vitaldaten ⭐ 6

Die Daten von Fitnessarmbändern und SmartwatchesDie Daten von Fitnessarmbändern und Smartwatches, sogenannten Wearables, können Hinweise auf Symptome einer COVID-19 Erkrankung liefern. Mit Hilfe der Corona-Datenspende-App (CDA) konnten Bürger:innen dem Robert Koch-Institut solche Daten für wissenschaftliche Zwecke zur Verfügung stellen.

Covid 19 Todesfaelle_in_deutschland ⭐ 6

Im Datensatz 'COVID-19-Todesfälle in Deutschland' werden die Todesfälle in Bezug auf COVID-19 in Deutschland bereitgestellt. Darüber hinaus wird neben der Anzahl der übermittelten Todesfälle der Fall-Verstorbenen-Anteil berechnet. Angaben zum Tod zählen zu den melde- und übermittlungspflichtigen Inhalten. Bei der Ermittlung von Todesfällen und...

Coronavirus Cplp ⭐ 6

[Not up to date] Corona Vírus (COVID-19) na CPLP: Angola, Brasil, Cabo Verde, Guiné Equatorial, Guiné-Bissau, Macau, Moçambique, Portugal, São Tomé e Príncipe e Timor-Leste

Nf Ncov Voc ⭐ 5

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

Covid 19 Choropleth Map Uk ⭐ 5

Visualisation of the UK COVID-19 cases breakdown

Covid Bioinformatics ⭐ 5

Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

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