Segalign
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC4140
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Dnabert | 471 | 8 months ago | 60 | apache-2.0 | Python | |||||
| DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome | ||||||||||
| Arioc | 54 | 10 months ago | bsd-3-clause | |||||||
| Arioc: GPU-accelerated DNA short-read alignment | ||||||||||
| Segalign | 26 | 2 years ago | 2 | mit | C++ | |||||
| A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043 | ||||||||||
| Gerbil | 23 | 4 years ago | 9 | mit | C++ | |||||
| A fast and memory-efficient k-mer counter with GPU-support | ||||||||||
| Genome Indexing On Gpu | 9 | 11 years ago | C | |||||||
| The project involves parallelizing the construction of suffix arrays on the GPU for the purpose of genome indexing. | ||||||||||
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