Genome Indexing On Gpu
The project involves parallelizing the construction of suffix arrays on the GPU for the purpose of genome indexing.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Dashing | 147 | a year ago | 24 | gpl-3.0 | C++ | |||||
| Fast and accurate genomic distances using HyperLogLog | ||||||||||
| Pufferfish | 104 | 10 months ago | 21 | gpl-3.0 | C | |||||
| An efficient index for the colored, compacted, de Bruijn graph | ||||||||||
| Mof Search | 18 | 4 months ago | 8 | other | Python | |||||
| BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours | ||||||||||
| Genome Indexing On Gpu | 9 | 11 years ago | C | |||||||
| The project involves parallelizing the construction of suffix arrays on the GPU for the purpose of genome indexing. | ||||||||||
| Despi | 8 | 3 years ago | 1 | apache-2.0 | C++ | |||||
| fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing | ||||||||||
| Miniphy | 7 | 3 months ago | 7 | other | Python | |||||
| Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁] | ||||||||||
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