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Search results for metagenomics amplicon

11 search results found

Vsearch ⭐ 605

Versatile open-source tool for microbiome analysis

Accurate sample inference from amplicon data with single nucleotide resolution

Decontam ⭐ 122

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Viralrecon ⭐ 101

Assembly and intrahost/low-frequency variant calling for viral samples

Tools Microbiome Analysis ⭐ 95

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

Microbiomeutilities ⭐ 29

The is mostly a wrapper tool using phyloseq and microbiome R packages.

micca - MICrobial Community Analysis

zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.

Bioinformatics_pipeline ⭐ 5

Bioinformatics Pipeline

MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data

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