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Search results for amplicon
amplicon
x
24 search results found
Vsearch
⭐
605
Versatile open-source tool for microbiome analysis
Dada2
⭐
428
Accurate sample inference from amplicon data with single nucleotide resolution
Decontam
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122
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Crispresso
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110
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Viralrecon
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101
Assembly and intrahost/low-frequency variant calling for viral samples
Tools Microbiome Analysis
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95
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Flextaxd
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54
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Cecret
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36
Reference-based consensus creation
Dicey
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32
In-silico PCR, primer design and padlock design for in-situ sequencing
Microbiomeutilities
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29
The is mostly a wrapper tool using phyloseq and microbiome R packages.
Mageri
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19
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
Lorax
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16
A long-read analysis toolbox for cancer and population genomics
Micca
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16
micca - MICrobial Community Analysis
Varvamp
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15
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Ampliconclassifier
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12
Classify output of AmpliconArchitect to detect types of focal amplifications present
Amplicon_coverage_plot
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12
interactive barplot for amplicon sequencing
Vampirus
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10
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
Dada2_guidelines
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8
A repository with a general dada2 pipeline for amplicon processing
Zamp
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7
zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
Megapath
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5
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
Laca
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5
A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)
Bioinformatics_pipeline
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5
Bioinformatics Pipeline
Insilico_pcr
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5
extract long read subsequences from a pair of primers
Grimer
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5
GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
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1-24 of 24 search results
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