Tools Microbiome Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Sequenceserver | 259 | 1 | 5 months ago | 68 | October 05, 2023 | 91 | agpl-3.0 | JavaScript | ||
| Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!) | ||||||||||
| Tools Microbiome Analysis | 95 | a year ago | CSS | |||||||
| A list of R environment based tools for microbiome data exploration, statistical analysis and visualization | ||||||||||
| Wally | 86 | 5 months ago | 1 | bsd-3-clause | C++ | |||||
| Wally: Visualization of aligned sequencing reads and contigs | ||||||||||
| Fastv | 56 | 4 years ago | 1 | mit | C++ | |||||
| An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19. | ||||||||||
| Cnview | 50 | 6 years ago | 3 | mit | R | |||||
| Visualization and annotation of CNVs from population-scale whole-genome sequencing data | ||||||||||
| Fluentdna | 43 | 3 years ago | 3 | January 13, 2020 | 30 | JavaScript | ||||
| FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects. | ||||||||||
| Dokdo | 30 | a year ago | 4 | mit | Python | |||||
| A Python package for microbiome sequencing analysis with QIIME 2 | ||||||||||
| Angsd Wrapper | 13 | 4 years ago | 5 | mit | Shell | |||||
| Utilities for analyzing next generation sequencing data. | ||||||||||
| Chronqc | 13 | 5 years ago | 3 | mit | HTML | |||||
| Manuscript describing ChronQC is now available online in Bioinformatics | ||||||||||
| Nasqar | 10 | 4 years ago | 1 | HTML | ||||||
| NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization | ||||||||||
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