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Search results for sequencing metagenomics

22 search results found

Metaphlan ⭐ 242

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

Insilicoseq ⭐ 158

🚀 A sequencing simulator

Sunbeam ⭐ 157

A robust, extensible metagenomics pipeline

Ampliseq ⭐ 141

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Decontam ⭐ 122

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Dnanalyzer ⭐ 122

Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Tools Microbiome Analysis ⭐ 95

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

Czid Web ⭐ 75

Infectious Disease Sequencing Platform

A package for designing compact and comprehensive capture probe sets.

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

Grabseqs ⭐ 44

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

Graph-based assembly phasing

Covid 19 Signal ⭐ 32

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Wochenende ⭐ 30

Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

Microbiomeutilities ⭐ 29

The is mostly a wrapper tool using phyloseq and microbiome R packages.

Minotourapp ⭐ 21

Minotour API, web and client code

Gargammel ⭐ 20

gargammel is an ancient DNA simulator

A Better Sequencing Simulator for Metagenomics

Microbiome_notes ⭐ 13

A continually expanding collection of microbiome analysis tools

Quasimodo ⭐ 12

QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture

Shotgun Metagenomics Pipeline ⭐ 8

A pipeline for primary analysis of shotgun metagenomic sequencing data

Nanometa_live ⭐ 7

A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.

Ancient DNA Read Simulator for Metagenomic

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