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Search results for assembly metagenomics

28 search results found

Megahit ⭐ 442

Ultra-fast and memory-efficient (meta-)genome assembler

ATLAS - Three commands to start analyzing your metagenome data

Squeezemeta ⭐ 308

A complete pipeline for metagenomic analysis

Rapid comparison and dereplication of genomes

Assembly and binning of metagenomes

Viralrecon ⭐ 101

Assembly and intrahost/low-frequency variant calling for viral samples

Metagraph ⭐ 81

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

A hybrid assembly and MAG recovery pipeline (and more!)

Funcscan ⭐ 49

(Meta-)genome screening for functional and natural product gene sequences

A general metagenomics data mining system focus on robust microbiome research

Microbiomebestpracticereview ⭐ 45

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

Graph-based assembly phasing

Binarena ⭐ 23

BinaRena: Interactive Visualization and Binning of Metagenomic Contigs

Metagenomescope ⭐ 22

Visualization tool for (meta)genome assembly graphs

Mapping-Assisted Targeted-Assembly for Metagenomics

Fast in-silico normalization algorithm for NGS data

Tracespipe ⭐ 16

Reconstruction and analysis of viral and host genomes at multi-organ level

Virus metagenomic pipeline for unknown host or in absence of a host genome

Metagenomics_workflows ⭐ 13

Workflows for metagenomic sequence data processing and analysis.

Quasimodo ⭐ 12

QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture

MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.

Bioinformatics Toolbox ⭐ 10

Docker container for bioinformatics tools and pipelines

Assembly and intrahost / low-frequency variant calling for viral samples

Metafinishersc ⭐ 10

This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap-filling.

Metassemble ⭐ 7

Scripts to run several metagenomics assembly programs

Mikrokondo ⭐ 6

A simple pipeline for bacterial assembly and quality control

Nbis Meta ⭐ 5

A snakemake workflow for metagenomic projects

Topic Metagenomics ⭐ 5

A repository for the lessons and notebooks used for Binder tutorials

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1-28 of 28 search results

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