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Search results for dna ngs
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23 search results found
Deepvariant
⭐
2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk
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1,576
Official code repository for GATK versions 4 and up
Galaxy
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1,211
Data intensive science for everyone.
Htsjdk
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271
A Java API for high-throughput sequencing data (HTS) formats.
Ngsplot
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231
Quick mining and visualization of NGS data by integrating genomic databases
Ugene
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190
UGENE is free open-source cross-platform bioinformatics software
Abra2
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69
ABRA2
Catch
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63
A package for designing compact and comprehensive capture probe sets.
Cfdnapattern
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42
Pattern Recognition for Cell-free DNA
Circle Map
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39
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Mapdamage
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37
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
Hpg Aligner
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32
HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
Ngsdat2
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28
NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)
Pathos
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22
PathOS is a clinical application for filtering, analysing and reporting on NGS variants
Ctdnatools
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17
R package to work with ctDNA sequencing data
Phat
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17
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Ngs_dna
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13
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
Sting
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12
Ultrafast sequence typing and gene detection from NGS raw reads
Deepvariant On Spark
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11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Seqprocess
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8
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
Ansible Pipelines
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8
Fonda
⭐
7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
Satminer
⭐
5
satMiner: A Toolkit to NGS satellite DNA mining and analysis
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1-23 of 23 search results
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