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Search results for cwl common workflow language
common-workflow-language
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cwl
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56 search results found
Common Workflow Language
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1,425
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Toil
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860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Cwltool
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314
Common Workflow Language reference implementation
Composer
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285
Visual and code editor for Common Workflow Language
Pgap
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263
NCBI Prokaryotic Genome Annotation Pipeline
Cwl Airflow
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178
Python package to extend Airflow functionality with CWL1.1 support
Analysis Workflows
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99
Open workflow definitions for genomic analysis from MGI at WUSM.
Bunny
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70
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
Bio Cwl Tools
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65
CWL CommandLineTool descriptions for biology/life-sciences related applications
Ochre
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57
Toolbox for OCR post-correction
Benten
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49
A language server for Common Workflow Language
Cwl Ts
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48
Typescript data model for Common Workflow Language
Cwlviewer
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40
A web application to view and share Common Workflow Language workflows
Janis
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39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
User_guide
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38
The CWL v1.0 - v1.2 user guide
Cwl Utils
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30
Python utilities for CWL
Virtus
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28
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Sevenbridges R
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27
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
Wdl Cwl Translator
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25
A translator from WDL to CWL v1.2
Cwl Ngs Workflows Cbb
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23
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Gdc Dnaseq Cwl
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21
CWL for GDC DNASeq workflows
Weaver
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20
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
Pipeline V5
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19
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Ebi Metagenomics Cwl
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19
This repository contains the CWL description of the EBI Metagenomics pipeline
Ggr Cwl
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19
CWL tools and workflows for GGR
Cwltest
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16
Framework for testing CWL tools and workflows
Yacle
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16
Yet Another CWL Engine by Golang
H3abionet16s
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15
H3ABioNet 16S rDNA diverstity analysis package
Cwl.go
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15
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
Ipython2cwl
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15
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
Cwl Patterns
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14
Patterns commonly encountered when writing CWL workflows
Sevenbridges Cwl
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14
Seven Bridges Python library for programatic generation of CWL workflows.
Cloudneo
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13
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
Cwl Workflows
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13
Workflows written in common workflow language (CWL)
Workflows
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12
CWL based Bioinformatics Workflows
Kf Somatic Workflow
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11
🔬 Somatic workflow for Kids-First
Cwl Website
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11
www.commonwl.org
Dat2 Cwl
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10
Common Workflow Language definition files for workflows introduced in DAT2
Cwl Format
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9
A very opinionated code formatter for CWL
Kf Alignment Workflow
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9
🔬 Alignment workflow for Kids-First DRC
Kf Rnaseq Workflow
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9
🔬 RNA-Seq workflow for Kids-First DRC
Cwl2argparse
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8
cwl2argparse generates an argparse definition from CWL tool arguments that can be pasted in a Python program and used
Pipelines Cwl
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8
Pipelines developed and used by 4DN-DCIC in Common Workflow Language
Ep3
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8
A workflow engine for CWL which aims to have a pluggable architecture
Cwl For Remote Container Template
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7
A template to write CWL documents with VSCode with remote container extension
Tidycwl
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7
Tidy Common Workflow Language Tools and Workflows
Cwl Inspector
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7
This tool provides a handy way to inspect properties of tools or workflows written in Common Workflow Language
Workflow Is Cwl
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6
This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
Cwl Mode
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6
CWL mode for Emacs
Test_bcbio_cwl
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6
Test workflows, run scripts and data for bcbio Common Workflow Language integration
Tindaisy
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6
CWL somatic variant caller
Examples Compute
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6
Autopore
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6
Suite of CWL workflows for nanopore de novo assembly.
Dockstore Tool Bamstats
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6
A repo for the BAMStats command, used as the tutorial for Dockstore
Kf Jointgenotyping Workflow
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6
🔬 Joint genotyping workflow for Kids-First DRC
Cwl Tutorial
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5
This is a tutorial for Common Workflow Language (CWL)
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1-56 of 56 search results
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