Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Toil | 860 | 19 | 12 | 3 months ago | 528 | July 27, 2023 | 407 | apache-2.0 | Python | |
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python. | ||||||||||
Pgap | 263 | 3 months ago | 15 | other | Common Workflow Language | |||||
NCBI Prokaryotic Genome Annotation Pipeline | ||||||||||
Analysis Workflows | 99 | 10 months ago | 89 | mit | Common Workflow Language | |||||
Open workflow definitions for genomic analysis from MGI at WUSM. | ||||||||||
Emg Viral Pipeline | 98 | 7 months ago | 19 | apache-2.0 | Python | |||||
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies | ||||||||||
Tibanna | 68 | 1 | 3 months ago | 280 | October 06, 2023 | 25 | mit | Python | ||
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command. | ||||||||||
Janis | 39 | 2 | 7 | 8 months ago | 62 | August 30, 2023 | 16 | gpl-3.0 | Python | |
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows | ||||||||||
Nlppln | 33 | 1 | 5 years ago | 6 | January 08, 2019 | 11 | apache-2.0 | Python | ||
NLP pipeline software using common workflow language | ||||||||||
Pipeline V5 | 19 | 8 months ago | 4 | apache-2.0 | HTML | |||||
This repository contains all CWL descriptions of the MGnify pipeline version 5.0. | ||||||||||
Ebi Metagenomics Cwl | 19 | 3 years ago | 12 | Common Workflow Language | ||||||
This repository contains the CWL description of the EBI Metagenomics pipeline | ||||||||||
Chiron | 16 | 5 years ago | mit | C++ | ||||||
Tools and utilities for running Dockerized metagenomics tools in the Cloud |