Awesome Open Source

Programming Languages

Search results for python cwl

44 search results found

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Arvados ⭐ 354

An open source platform for managing and analyzing biomedical big data

Cwltool ⭐ 314

Common Workflow Language reference implementation

Cwl Airflow ⭐ 178

Python package to extend Airflow functionality with CWL1.1 support

REANA: Reusable research data analysis platform

[Historical] Reproducible Analyses for Bioinformatics

Emg Viral Pipeline ⭐ 98

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Genomes Pipeline ⭐ 63

MGnify genome analysis pipeline

A language server for Common Workflow Language

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

Calrissian ⭐ 37

CWL on Kubernetes

Scriptcwl ⭐ 34

Create cwl workflows by writing a simple Python script

Workflow Service ⭐ 34

Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows

Cwl Utils ⭐ 30

Python utilities for CWL

[Experimental] Workflow Definition Language (WDL) to CWL

Project Manager for NGS data analysis

Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package

Framework for testing CWL tools and workflows

An evaluation script based on the C/W/L framework that is TREC Compatible and provides a replacement for TREC_EVAL and independent scripts for INST, RBP, TBG and U-Measure, etc. All measurements are reported in the same units making all metrics directly comparable.

Import and run CWL workflows on DNAnexus (alpha)

Sevenbridges Cwl ⭐ 14

Seven Bridges Python library for programatic generation of CWL workflows.

Clihelpparser ⭐ 13

Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)

Deoplete Latex ⭐ 13

An experimental deoplete source for LaTeX completion

Cwl Airflow Parser ⭐ 13

Package to extend Airflow functionality with CWL v1.0 support

Pymethylprocess ⭐ 10

Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.

Webservice Cwl ⭐ 10

Programmatic access to various data resources and analysis EBI tools via CWL

Cwl2script ⭐ 9

Compile CWL workflow to shell script

Generating tool descriptors from bio.tools

Genomic Annotation Logic and Execution System

Prototype interface for automatically generating CWL tools from QIIME 2 actions

Command line utility to pack and upload/download CWL to/from SB powered platform

An evaluation script based on the C/W/L framework that is TREC Compatible and provides a replacement for INST_EVAL, RBP_EVAL and TREC_EVAL

A REST service for running CWL workflows on remote clusters

Rnaseqsim ⭐ 6

Sevenbridges Cwl Draft2 Upgrader ⭐ 6

Command line tool to upgrade sbg:draft2 to CWL v1.0.

Gatk Cwl Generator ⭐ 6

Generates CWL files from the GATK documentation

Containerinception ⭐ 6

Gerber: Generalized Easy Reproducible Bioinformatics Environment wRapper

Galaxy2cwl ⭐ 5

Converter from Galaxy tool XML to CWL CommandLineTool

Workflow Tools Evaluation ⭐ 5

Evaluating workflow tools and formats, such as the Common Workflow Language (CWL) for possible use within NBIS

Biowardrobe Airflow Analysis ⭐ 5

BioWardrobe's backend rewritten for Apache Airflow.

Reana Workflow Engine Cwl ⭐ 5

REANA Workflow Engine CWL

Cwl Upgrader ⭐ 5

Upgrade CWL syntax to a newer version

Related Searches

Python Jupyter Notebook (16,242)

Python Docker (14,113)

Python Testing (9,479)

Python Natural Language Processing (9,064)

Python Amazon Web Services (7,946)

Python Server (7,793)

Python Classification (5,958)

Python Command Line (5,367)

Python Cloud Computing (4,599)

Python Language (4,480)

1-44 of 44 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.