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cwl
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145 search results found
Common Workflow Language
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1,425
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Cromwell
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944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Toil
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874
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Aws Secure Environment Accelerator
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698
The AWS Secure Environment Accelerator is a tool designed to help deploy and operate secure multi-account, multi-region AWS environments on an ongoing basis. The power of the solution is the configuration file which enables the completely automated deployment of customizable architectures within AWS without changing a single line of code.
Arvados
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354
An open source platform for managing and analyzing biomedical big data
Cwltool
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314
Common Workflow Language reference implementation
Composer
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285
Visual and code editor for Common Workflow Language
Pgap
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263
NCBI Prokaryotic Genome Annotation Pipeline
Cwl Airflow
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178
Python package to extend Airflow functionality with CWL1.1 support
Captk
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131
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Cromwellonazure
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125
Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure
Reana
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114
REANA: Reusable research data analysis platform
Dockstore
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113
Our VM/Docker sharing infrastructure and management component
Rabix
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104
[Historical] Reproducible Analyses for Bioinformatics
Analysis Workflows
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99
Open workflow definitions for genomic analysis from MGI at WUSM.
Legacy
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98
Deprecated
Emg Viral Pipeline
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98
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Planemo
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85
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
Workflow Execution Service Schemas
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82
The WES API is a standard way to run and manage portable workflows.
Cwl Svg
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72
A library for generating an interactive SVG visualization of CWL workflows
Bunny
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70
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
Tibanna
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68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Bio Cwl Tools
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65
CWL CommandLineTool descriptions for biology/life-sciences related applications
Genomes Pipeline
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63
MGnify genome analysis pipeline
Awe
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62
workflow and resource management system for bioinformatics data analysis
Ochre
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57
Toolbox for OCR post-correction
Benten
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49
A language server for Common Workflow Language
Cwl Ts
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48
Typescript data model for Common Workflow Language
Systempiper
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45
Project Website:
Cwlviewer
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40
A web application to view and share Common Workflow Language workflows
Janis
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39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
User_guide
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38
The CWL v1.0 - v1.2 user guide
Calrissian
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37
CWL on Kubernetes
Ro Crate Py
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37
Python library for RO-Crate
React Router Redux Mobile Spa
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37
基于 fis3+react+redux+react-router移动端单页面应用
Cwlexec
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35
A new open source tool to run CWL workflows on LSF
Workflow Service
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34
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
Scriptcwl
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34
Create cwl workflows by writing a simple Python script
Nlppln
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33
NLP pipeline software using common workflow language
Cwl Utils
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30
Python utilities for CWL
Tool Registry Service Schemas
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30
APIs for discovering genomics tools, their metadata and their containers
Cwl Data
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30
Call of Duty World League Player Data
Dxcompiler
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29
WDL and CWL compiler for the DNAnexus platform
Virtus
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28
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Workflows
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28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Sevenbridges R
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27
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
Wdl2cwl
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26
[Experimental] Workflow Definition Language (WDL) to CWL
Wdl Cwl Translator
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25
A translator from WDL to CWL v1.2
Iobroker.wolf
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24
Connect WOLF heating, solar and domestic ventilation
Cwl Ngs Workflows Cbb
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23
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Gdc Workflow Overview
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23
Overview of GDC Harmonization Workflows
Hotsub
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23
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
Gdc Dnaseq Cwl
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21
CWL for GDC DNASeq workflows
Pm4ngs
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21
Project Manager for NGS data analysis
Ikra
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21
RNAseq pipeline centered on Salmon
Cwl2nxf
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20
Import a CWL workflow specification to Nextflow script (experimental)
Weaver
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20
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
Ebi Metagenomics Cwl
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19
This repository contains the CWL description of the EBI Metagenomics pipeline
Ggr Cwl
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19
CWL tools and workflows for GGR
Pipeline V5
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19
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Workflows
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18
Bioinformatics curated workflows that use Biocontainers tools
Cwl Tes
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18
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
Cwl Metrics
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16
Accumulating container resource usage with workflow metadata
Chiron
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16
Tools and utilities for running Dockerized metagenomics tools in the Cloud
Yacle
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16
Yet Another CWL Engine by Golang
Nccwl
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16
CWL == Crash w/ Logs. When your app crash, zip and send the crash info and your recent logs.
Cwltest
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16
Framework for testing CWL tools and workflows
H3abionet16s
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15
H3ABioNet 16S rDNA diverstity analysis package
Ipython2cwl
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15
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
Dockstore Ui2
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15
Website user interface for Dockstore in Angular2
Cwl.go
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15
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
Cwl Patterns
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14
Patterns commonly encountered when writing CWL workflows
Sevenbridges Cwl
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14
Seven Bridges Python library for programatic generation of CWL workflows.
Cwl
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14
An evaluation script based on the C/W/L framework that is TREC Compatible and provides a replacement for TREC_EVAL and independent scripts for INST, RBP, TBG and U-Measure, etc. All measurements are reported in the same units making all metrics directly comparable.
Dx Cwl
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14
Import and run CWL workflows on DNAnexus (alpha)
Clihelpparser
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13
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
Cwl Workflows
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13
Workflows written in common workflow language (CWL)
Cloudneo
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13
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
Consonance
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13
Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
Workflow Meetup
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13
About Workflow related meetup
Cwl Airflow Parser
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13
Package to extend Airflow functionality with CWL v1.0 support
Deoplete Latex
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13
An experimental deoplete source for LaTeX completion
Cwlprov
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13
Profile for provenance research object of a CWL workflow run
Precipes
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13
Parallel Recipes : parallel workflow execution made easy
Rcwl
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13
Write CWL in R
Workflows
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12
CWL based Bioinformatics Workflows
Ubcbooker
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11
🚩 CLI tool to book project rooms in UBC
Cwl Novice Tutorial
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11
Introduction to Workflows with Common Workflow Language
Kf Somatic Workflow
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11
🔬 Somatic workflow for Kids-First
Raspberry_telemetry
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11
This project will have the files for a Cube Sat Telemetry system Using Raspberry Pi Transmitter Board
Cwl Website
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11
www.commonwl.org
Virus_detection_sra
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10
Pymethylprocess
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10
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
Task Execution Server
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10
Webservice Cwl
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10
Programmatic access to various data resources and analysis EBI tools via CWL
Dat2 Cwl
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10
Common Workflow Language definition files for workflows introduced in DAT2
Kf Alignment Workflow
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9
🔬 Alignment workflow for Kids-First DRC
Tooldog
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9
Generating tool descriptors from bio.tools
Cwl2script
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9
Compile CWL workflow to shell script
React Workflow Viz
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9
React component for visualizing CWL-like workflows (and similar data)
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