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Search results for bioinformatics cwl
bioinformatics
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cwl
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27 search results found
Cromwell
⭐
944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Arvados
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354
An open source platform for managing and analyzing biomedical big data
Dockstore
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113
Our VM/Docker sharing infrastructure and management component
Rabix
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104
[Historical] Reproducible Analyses for Bioinformatics
Cwl Svg
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72
A library for generating an interactive SVG visualization of CWL workflows
Tibanna
⭐
68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Awe
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62
workflow and resource management system for bioinformatics data analysis
Janis
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39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Virtus
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28
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Workflows
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28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Sevenbridges R
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27
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
Gdc Workflow Overview
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23
Overview of GDC Harmonization Workflows
Hotsub
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23
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
Gdc Dnaseq Cwl
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21
CWL for GDC DNASeq workflows
Pm4ngs
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21
Project Manager for NGS data analysis
Workflows
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18
Bioinformatics curated workflows that use Biocontainers tools
Yacle
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16
Yet Another CWL Engine by Golang
Cwl.go
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15
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
Sevenbridges Cwl
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14
Seven Bridges Python library for programatic generation of CWL workflows.
Clihelpparser
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13
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
Workflows
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12
CWL based Bioinformatics Workflows
Kf Somatic Workflow
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11
🔬 Somatic workflow for Kids-First
Kf Rnaseq Workflow
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9
🔬 RNA-Seq workflow for Kids-First DRC
Kf Alignment Workflow
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9
🔬 Alignment workflow for Kids-First DRC
Containerinception
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6
Gerber: Generalized Easy Reproducible Bioinformatics Environment wRapper
Kf Jointgenotyping Workflow
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6
🔬 Joint genotyping workflow for Kids-First DRC
Bioc2020rcwl
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6
Bioconductor toolchain for usage and development of reproducible bioinformatics pipelines
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Docker Bioinformatics (164)
1-27 of 27 search results
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