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The Top 23 Genomics Ngs Open Source Projects

Open source projects categorized as Genomics Ngs
Categories > Science > Genomics
Categories > Science > Ngs
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 5 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 19 days ago
Awesome Omics ⭐ 536
A collection of awesome things regarding all omics.
most recent commit 3 months ago
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16most recent commit 3 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5most recent commit a year ago
Cloud Pipeline ⭐ 137
Cloud agnostic genomics analysis, scientific computation and storage platform
most recent commit 3 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Reg Gen ⭐ 96
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
most recent commit 6 months ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Bwa Meme ⭐ 92
BWA-MEME: Faster BWA-MEM2 using learned-index
most recent commit 6 months ago
Genomics ⭐ 78
Scripts, utilities and programs for genomic bioinformatics.
most recent commit 4 months ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Bio Dockers ⭐ 32
🐳 Bio-dockers: dockerized bioinformatic tools
most recent commit 4 months ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3most recent commit 4 months agopypi oxbow} Downloads
Mtbseq_source ⭐ 32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
most recent commit 8 months ago
The 5 Most Depended On Genomics Ngs Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Disq ⭐ 31
A library for manipulating bioinformatics sequencing formats in Apache Spark
dependent packages 3total releases 10latest release February 09, 2021most recent commit 8 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
The 10 Latest Releases In Genomics Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16latest release May 16, 2023most recent commit 3 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5latest release September 19, 2022most recent commit a year ago
Disq ⭐ 31
A library for manipulating bioinformatics sequencing formats in Apache Spark
dependent packages 3total releases 10latest release February 09, 2021most recent commit 8 months ago
Ctdnatools ⭐ 17
R package to work with ctDNA sequencing data
total releases 1latest release March 04, 2020most recent commit 2 years ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29latest release September 21, 2018most recent commit a year ago
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