Project Name	Stars	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Goleft	203	1	4 months ago	31	August 03, 2021	14	mit	Go
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
Smudgeplot	200		3 months ago			19	apache-2.0	R
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Cgranges	144		10 months ago			4	mit	C
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
Psmc	120		a year ago			41	other	C
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
Reg Gen	96		6 months ago			44	other	Python
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Geoquery	73		10 months ago			18	mit	R
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
Chanjo	48		6 months ago			40	mit	Python
Chanjo provides a better way to analyze coverage data in clinical sequencing.
Seqcover	38		3 years ago			3	mit	Nim
seqcover allows user to view coverage for hundreds of genes and dozens of samples
Rna Seq_notes	29		6 months ago				mit
A continually expanding collection of RNA-seq tools
Wiggleplotr	28		2 years ago			7	apache-2.0	R
A small R package to make sequencing read coverage plots in R.

Alternatives To Reg Gen

Select To Compare

Goleft ⭐ 203

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

dependent packages 1total releases 31most recent commit 4 months ago

Smudgeplot ⭐ 200

Inference of ploidy and heterozygosity structure using whole genome sequencing data

most recent commit 3 months ago

Cgranges ⭐ 144

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

most recent commit 10 months ago

Psmc ⭐ 120

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

most recent commit a year ago

Reg Gen ⭐ 96

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

most recent commit 6 months ago

Geoquery ⭐ 73

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

most recent commit 10 months ago

Chanjo ⭐ 48

Chanjo provides a better way to analyze coverage data in clinical sequencing.

most recent commit 6 months ago

Seqcover ⭐ 38

seqcover allows user to view coverage for hundreds of genes and dozens of samples

most recent commit 3 years ago

Rna Seq_notes ⭐ 29

A continually expanding collection of RNA-seq tools

most recent commit 6 months ago

Wiggleplotr ⭐ 28

A small R package to make sequencing read coverage plots in R.

most recent commit 2 years ago

Suggest An Alternative To reg-gen

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Reg Gen vs Goleft

Reg Gen vs Smudgeplot

Reg Gen vs Rna Seq_notes

Reg Gen vs Wiggleplotr

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