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The Top 23 Variants Genome Open Source Projects

Open source projects categorized as Variants Genome
Categories > Science > Genome
Categories > Variants
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 5 months ago
Vg ⭐ 1,022
tools for working with genome variation graphs
most recent commit 4 months ago
Biotools ⭐ 525
A list of useful bioinformatics resources
most recent commit 8 months ago
Samplot ⭐ 458
Plot structural variant signals from many BAMs and CRAMs
total releases 3most recent commit 5 months ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 7 months ago
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 4 months ago
Awesome Cancer Variant Databases ⭐ 284
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
most recent commit 7 months ago
Hap.py ⭐ 283
Haplotype VCF comparison tools
most recent commit 2 years ago
Gemini ⭐ 272
a lightweight db framework for exploring genetic variation.
most recent commit 4 years ago
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 7 months ago
Hgvs ⭐ 226
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
dependent packages 12total releases 104most recent commit 4 months agopypi hgvs} Downloads
Pepper ⭐ 216
PEPPER-Margin-DeepVariant
total releases 8most recent commit 7 months ago
Doc Annovar ⭐ 193
Documentation for the ANNOVAR software
most recent commit 5 months ago
Regenie ⭐ 148
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
most recent commit 5 months ago
Lancet ⭐ 145
Microassembly based somatic variant caller for NGS data
most recent commit 2 years ago
Dna Seq Analysis ⭐ 128
DNA sequencing analysis notes from Ming Tang
most recent commit a year ago
Assemblytics ⭐ 124
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
most recent commit 4 months ago
Variantspark ⭐ 121
machine learning for genomic variants
total releases 38most recent commit a year ago
Benchmarking Tools ⭐ 110
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
most recent commit 4 years ago
Vcf Kit ⭐ 107
VCF-kit: Assorted utilities for the variant call format
total releases 18most recent commit 8 months ago
Genomewarp ⭐ 96
GenomeWarp translates genetic variants from one genome assembly version to another.
most recent commit 10 months ago
Expecto ⭐ 95
predicting expression effects of human genome variants ab initio from sequence
most recent commit 3 years ago
Pipeline Structural Variation ⭐ 87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
most recent commit 3 years ago
The 10 Latest Releases In Variants Genome Open Source Projects
Introgression Detection ⭐ 31
total releases 24latest release October 16, 2023most recent commit 5 months ago
Hgvs ⭐ 226
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
dependent packages 12total releases 104latest release November 21, 2022most recent commit 4 months agopypi hgvs} Downloads
Svim Asm ⭐ 48
Structural Variant Identification Method using Genome Assemblies
total releases 3latest release September 20, 2022most recent commit 2 years ago
Variantspark ⭐ 121
machine learning for genomic variants
total releases 38latest release May 20, 2022most recent commit a year ago
Varifier ⭐ 13
Variant call verification
total releases 3latest release April 08, 2021most recent commit a year ago
Vcf Kit ⭐ 107
VCF-kit: Assorted utilities for the variant call format
total releases 18latest release December 20, 2020most recent commit 8 months ago
Pepper ⭐ 216
PEPPER-Margin-DeepVariant
total releases 8latest release November 19, 2020most recent commit 7 months ago
Samplot ⭐ 458
Plot structural variant signals from many BAMs and CRAMs
total releases 3latest release October 11, 2020most recent commit 5 months ago
Pwas ⭐ 14
Proteome-Wide Association Study
total releases 2latest release March 09, 2020most recent commit 3 years ago
Svtools ⭐ 79
Tools for processing and analyzing structural variants.
total releases 9latest release September 12, 2019most recent commit 5 years ago
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