Benchmarking Tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Edta | 294 | 3 months ago | 35 | gpl-3.0 | Perl | |||||
| Extensive de-novo TE Annotator | ||||||||||
| Benchmarking Tools | 110 | 4 years ago | 6 | apache-2.0 | HTML | |||||
| Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls | ||||||||||
| Genome Stratifications | 41 | a year ago | other | HTML | ||||||
| Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium. These files can be used as standard resource of BED files for use with GA4GH benchmarking tools such as hap.py to stratify true positive, false positive, and false negative variant calls based on genomic context. | ||||||||||
| Two_step_graph_mapper | 12 | 4 years ago | 2 | Python | ||||||
| Goatassemblyscripts | 9 | 7 years ago | 1 | Perl | ||||||
| A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly | ||||||||||
| Varathon | 7 | 3 years ago | mit | Perl | ||||||
| A scalable variant calling and benchmarking framework supporting both short and long reads. | ||||||||||
| 2019_classifiers_benchmark | 5 | 4 years ago | 4 | HTML | ||||||
| Benchmarking of metagenomic classifiers | ||||||||||
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