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The Top 11 Vcf Cancer Genomics Open Source Projects

Open source projects categorized as Vcf Cancer Genomics
Categories > Science > Cancer Genomics
Categories > Science > Vcf
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 6 months ago
Somalier ⭐ 224
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
most recent commit 7 months ago
Somaticseq ⭐ 185
An ensemble approach to accurately detect somatic mutations using SomaticSeq
total releases 1most recent commit 6 months ago
Lancet ⭐ 145
Microassembly based somatic variant caller for NGS data
most recent commit 2 years ago
Sigprofilerextractor ⭐ 132
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
dependent packages 3total releases 50most recent commit 5 months agopypi SigProfilerExtractor} Downloads
Cpsr ⭐ 50
Cancer Predisposition Sequencing Reporter (CPSR)
most recent commit 9 months ago
Sigprofilermatrixgeneratorr ⭐ 17
R wrapper for utilizing the SigProfilerMatrixGenerator framework
most recent commit a year ago
Variants2neoantigen ⭐ 14
a neoantigen calling pipeline begins from variants record file (MAF)
most recent commit 5 years ago
Sigprofilerextractorr ⭐ 11
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
most recent commit a year ago
Svparser ⭐ 6
Explore and filter structural variant calls from Lumpy and Delly VCF files
most recent commit 3 years ago
The 3 Latest Releases In Vcf Cancer Genomics Open Source Projects
Somaticseq ⭐ 185
An ensemble approach to accurately detect somatic mutations using SomaticSeq
total releases 1latest release May 04, 2022most recent commit 6 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
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