Svparser
Explore and filter structural variant calls from Lumpy and Delly VCF files
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Pygeno | 242 | 1 | 4 years ago | 18 | December 15, 2021 | 5 | apache-2.0 | Python | ||
| Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs | ||||||||||
| Pcgr | 234 | 6 months ago | 13 | mit | R | |||||
| Personal Cancer Genome Reporter (PCGR) | ||||||||||
| Somalier | 224 | 7 months ago | 42 | mit | Nim | |||||
| fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy" | ||||||||||
| Somaticseq | 185 | 6 months ago | 1 | May 04, 2022 | 5 | bsd-2-clause | Python | |||
| An ensemble approach to accurately detect somatic mutations using SomaticSeq | ||||||||||
| Lancet | 145 | 2 years ago | other | C | ||||||
| Microassembly based somatic variant caller for NGS data | ||||||||||
| Sigprofilerextractor | 132 |  | 3 | 5 months ago | 50 | November 21, 2023 | 1 | bsd-2-clause | Python | |
| SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. | ||||||||||
| Cpsr | 50 | 9 months ago | other | R | ||||||
| Cancer Predisposition Sequencing Reporter (CPSR) | ||||||||||
| Sigprofilermatrixgeneratorr | 17 | a year ago | 2 | bsd-2-clause | R | |||||
| R wrapper for utilizing the SigProfilerMatrixGenerator framework | ||||||||||
| Variants2neoantigen | 14 | 5 years ago | lgpl-3.0 | Shell | ||||||
| a neoantigen calling pipeline begins from variants record file (MAF) | ||||||||||
| Sigprofilerextractorr | 11 | a year ago | bsd-2-clause | R | ||||||
| An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. | ||||||||||
Alternatives To SvparserSelect To Compare
Alternative Project Comparisons
Popular Vcf Projects
Popular Cancer Genomics Projects
Popular Science Categories
Related Searches
Get A Weekly Email With Trending Projects For These Categories
No Spam. Unsubscribe easily at any time.
Perl
Vcf
Cancer Genomics