Project Name	Stars	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Somaticseq	185	6 months ago	1	May 04, 2022	5	bsd-2-clause	Python
An ensemble approach to accurately detect somatic mutations using SomaticSeq
Gcp Variant Transforms	114	2 years ago			110	apache-2.0	Python
GCP Variant Transforms
Neopredpipe	93	7 months ago			5	lgpl-3.0	Python
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
H3agwas	89	5 months ago			11	other	Nextflow
GWAS Pipeline for H3Africa
Pipeline Structural Variation	87	3 years ago			19	other	Python
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Selectiontools	53	a year ago			16	mit	Python
Pipeline to take VCF through to Selection Analysis.
Admixturepipeline	46	5 months ago				gpl-3.0	Python
A pipeline that accepts a VCF file to run through Admixture
Germline Dna	23	a year ago			2	mit	wdl
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
Allbiotc2	22	10 years ago			8		Python
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
Sv Pipeline	21	4 years ago			8		wdl
Pipeline for structural variation detection in cohorts

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Select To Compare

Somaticseq ⭐ 185

An ensemble approach to accurately detect somatic mutations using SomaticSeq

total releases 1most recent commit 6 months ago

Gcp Variant Transforms ⭐ 114

GCP Variant Transforms

most recent commit 2 years ago

Neopredpipe ⭐ 93

Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

most recent commit 7 months ago

H3agwas ⭐ 89

GWAS Pipeline for H3Africa

most recent commit 5 months ago

Pipeline Structural Variation ⭐ 87

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

most recent commit 3 years ago

Selectiontools ⭐ 53

Pipeline to take VCF through to Selection Analysis.

most recent commit a year ago

Admixturepipeline ⭐ 46

A pipeline that accepts a VCF file to run through Admixture

most recent commit 5 months ago

Germline Dna ⭐ 23

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

most recent commit a year ago

Allbiotc2 ⭐ 22

Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.

most recent commit 10 years ago

Sv Pipeline ⭐ 21

Pipeline for structural variation detection in cohorts

most recent commit 4 years ago

Suggest An Alternative To Variants2Neoantigen

Alternative Project Comparisons

Variants2neoantigen vs Somaticseq

Variants2neoantigen vs Gcp Variant Transforms

Variants2neoantigen vs Neopredpipe

Variants2neoantigen vs H3agwas

Variants2neoantigen vs Pipeline Structural Variation

Variants2neoantigen vs Selectiontools

Variants2neoantigen vs Admixturepipeline

Variants2neoantigen vs Germline Dna

Variants2neoantigen vs Allbiotc2

Variants2neoantigen vs Sv Pipeline

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