Dbg2olc
The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Deepvariant | 2,978 | 7 months ago | 8 | bsd-3-clause | Python | |||||
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
| Gatk | 1,576 | 2 | 3 months ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
| Official code repository for GATK versions 4 and up | ||||||||||
| Ncov | 1,348 | 5 months ago | 82 | mit | Python | |||||
| Nextstrain build for novel coronavirus SARS-CoV-2 | ||||||||||
| Mosdepth | 617 | 7 months ago | 49 | mit | Nim | |||||
| fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing | ||||||||||
| Sniffles | 479 | 5 months ago | 8 | July 27, 2023 | 95 | mit | Python | |||
| Structural variation caller using third generation sequencing | ||||||||||
| Hisat2 | 345 | 2 years ago | 172 | gpl-3.0 | C++ | |||||
| Graph-based alignment (Hierarchical Graph FM index) | ||||||||||
| Sarek | 299 | 5 months ago | 180 | mit | Nextflow | |||||
| Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing | ||||||||||
| Crispresso2 | 233 | 5 months ago | 24 | other | Python | |||||
| Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments | ||||||||||
| Hgvs | 226 |  | 16 | 12 | 5 months ago | 104 | November 21, 2022 | 67 | apache-2.0 | Python |
| Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs` | ||||||||||
| Roary | 219 | 2 years ago | 83 | November 06, 2019 | 132 | gpl-3.0 | Perl | |||
| Rapid large-scale prokaryote pan genome analysis | ||||||||||
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