Project Name	Stars	Most Recent Commit	Open Issues	License	Language
Arioc	54	9 months ago		bsd-3-clause
Arioc: GPU-accelerated DNA short-read alignment
Sneakysnake	44	a year ago	1	gpl-3.0	VHDL
SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
Gasal2	27	2 years ago	8	apache-2.0	C++

Wfa Gpu	24	5 months ago		mit	C
GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment
Mummergpu	7	7 years ago	1	other	C++
Fork of MUMmerGPU-2.0 that compiles without errors
Swift	5	7 years ago		gpl-2.0	Cuda
GPU-based DNA sequence alignment program using Smith-Waterman

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Arioc ⭐ 54

Arioc: GPU-accelerated DNA short-read alignment

most recent commit 9 months ago

Sneakysnake ⭐ 44

SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.

most recent commit a year ago

Gasal2 ⭐ 27

most recent commit 2 years ago

Wfa Gpu ⭐ 24

GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment

most recent commit 5 months ago

Mummergpu ⭐ 7

Fork of MUMmerGPU-2.0 that compiles without errors

most recent commit 7 years ago

Swift ⭐ 5

GPU-based DNA sequence alignment program using Smith-Waterman

most recent commit 7 years ago

Suggest An Alternative To swift

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