Scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Adam | 966 | 20 | 17 | 5 months ago | 14 | December 16, 2020 | 35 | apache-2.0 | Scala | |
| ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. | ||||||||||
| Circosjs | 454 |  | 10 | 8 | 2 years ago | 8 | October 10, 2017 | 48 | mit | JavaScript |
| d3 library to build circular graphs | ||||||||||
| Arvados | 354 | 5 months ago | 9 | September 21, 2023 | 13 | other | Go | |||
| An open source platform for managing and analyzing biomedical big data | ||||||||||
| Bigsnpr | 168 | 2 | 5 months ago | 15 | March 28, 2023 | 23 | R | |||
| R package for the analysis of massive SNP arrays. | ||||||||||
| Scarf | 83 | | 1 | 5 months ago | 43 | November 24, 2023 | 10 | bsd-3-clause | Python | |
| Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop. | ||||||||||
| Quantq | 61 | 2 years ago | 5 | gpl-3.0 | q | |||||
| The repository for the Machine Learning and Big Data with kdb+/q book by Novotny et al. | ||||||||||
| Mmtf Workshop 2018 | 53 | 2 years ago | 3 | apache-2.0 | Jupyter Notebook | |||||
| Structural Bioinformatics Training Workshop & Hackathon 2018 | ||||||||||
| Bindash | 39 | 5 months ago | 2 | other | C++ | |||||
| Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop | ||||||||||
| Pretzel | 36 | 6 months ago | 146 | gpl-3.0 | JavaScript | |||||
| Javascript full-stack framework for Big Data visualisation and analysis | ||||||||||
| Workflux | 30 | 5 months ago | 48 | apache-2.0 | JavaScript | |||||
| An open-source, cloud-ready web application for simplified deployment of big data workflows. | ||||||||||
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