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Search results for bioinformatics single cell rna seq

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21 search results found

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis

Cellrank ⭐ 279

CellRank: dynamics from multi-view single-cell data

Diffxpy ⭐ 157

Differential expression analysis for single-cell RNA-seq data.

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

Honeybadger ⭐ 94

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Cell_blast ⭐ 74

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

Bayesian MCMC matrix factorization algorithm

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Cell2cell ⭐ 44

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Deep Learning based cell composition analysis with Scaden.

Csbb Shiny ⭐ 28

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

Seuratv3wizard ⭐ 26

A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3

Stackeddae ⭐ 20

Stacked Denoising AutoEncoder based on TensorFlow

Muto_wilson_ncomm_2020 ⭐ 17

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq

Splatter Paper ⭐ 15

Data and analysis for the Splatter paper

Toolchest Client Python ⭐ 13

Toolchest Python client

A tool to quantify transposable elements expression in scRNA-seq

Uncurl_app ⭐ 6

A reference-based solution for single-cell analysis

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