Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Deepvariant | 2,978 | 5 months ago | 8 | bsd-3-clause | Python | |||||
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
Nucleus | 675 | 2 | 3 years ago | 18 | August 31, 2021 | 1 | other | C++ | ||
Python and C++ code for reading and writing genomics data. | ||||||||||
Gcp Essentials | 208 | 3 months ago | apache-2.0 | Jupyter Notebook | ||||||
Sample code and notes for my GCP courses on LinkedIn Learning | ||||||||||
Janggu | 205 | 3 years ago | 19 | August 04, 2020 | gpl-3.0 | Jupyter Notebook | ||||
Deep learning infrastructure for genomics | ||||||||||
Deepecg | 187 | a year ago | mit | Python | ||||||
ECG classification programs based on ML/DL methods | ||||||||||
Diffxpy | 157 | a year ago | 104 | bsd-3-clause | Python | |||||
Differential expression analysis for single-cell RNA-seq data. | ||||||||||
Clairvoyante | 142 | 3 years ago | bsd-3-clause | Python | ||||||
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing | ||||||||||
Deepsignal | 98 | a year ago | 11 | March 31, 2022 | 12 | gpl-3.0 | Python | |||
Detecting methylation using signal-level features from Nanopore sequencing reads | ||||||||||
Cell_blast | 74 | 9 months ago | 8 | February 08, 2023 | 5 | mit | Python | |||
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation. | ||||||||||
Molgraph | 34 | 5 months ago | 37 | November 27, 2023 | 5 | mit | Python | |||
Graph neural networks for molecular machine learning. Implemented and compatible with TensorFlow and Keras. |