Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Jcvi | 650 | 1 | 1 | 4 months ago | 97 | August 30, 2023 | 41 | bsd-2-clause | Python | |
Python library to facilitate genome assembly, annotation, and comparative genomics | ||||||||||
Orthologr | 68 | 7 months ago | 8 | gpl-2.0 | R | |||||
Genome wide orthology inference and dNdS estimation | ||||||||||
Uta | 59 | 3 months ago | 26 | apache-2.0 | Python | |||||
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image | ||||||||||
Arioc | 54 | 7 months ago | bsd-3-clause | |||||||
Arioc: GPU-accelerated DNA short-read alignment | ||||||||||
Viralmsa | 50 | 3 months ago | 1 | gpl-3.0 | Python | |||||
Reference-guided multiple sequence alignment of viral genomes | ||||||||||
Blast Bioinfor Tool | 30 | 4 years ago | mit | Python | ||||||
Python implementation of Basic Local Alignment Search Tool (BLAST) , which is the core algorithm in sequence alignment for genomes. | ||||||||||
Awesome Sequencing Tech Papers | 26 | 5 months ago | ||||||||
A collection of publications on comparison of high-throughput sequencing technologies. | ||||||||||
Chromeister | 16 | 2 years ago | 4 | gpl-3.0 | C | |||||
A dotplot generator for large chromosomes | ||||||||||
Positive Selection | 10 | 3 years ago | Perl | |||||||
Scripts and procedures for detecting positively selected genes and codons in primates | ||||||||||
Gsalign | 9 | 3 years ago | 4 | mit | C | |||||
GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison |