Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Biopython | 3,918 | 1,465 | 1,373 | 3 months ago | 58 | February 13, 2023 | 545 | other | Python | |
Official git repository for Biopython (originally converted from CVS) | ||||||||||
Minimap2 | 1,613 | 8 | 32 | 3 months ago | 27 | December 26, 2021 | 154 | other | C | |
A versatile pairwise aligner for genomic and spliced nucleotide sequences | ||||||||||
Bwa | 1,282 | a year ago | 1 | March 03, 2021 | 211 | gpl-3.0 | C | |||
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) | ||||||||||
Jcvi | 650 | 1 | 1 | 5 months ago | 97 | August 30, 2023 | 41 | bsd-2-clause | Python | |
Python library to facilitate genome assembly, annotation, and comparative genomics | ||||||||||
Bwa Mem2 | 645 | 5 months ago | 81 | other | C++ | |||||
The next version of bwa-mem | ||||||||||
Biojava | 564 | 96 | 16 | 3 months ago | 56 | June 02, 2023 | 71 | lgpl-2.1 | Java | |
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. | ||||||||||
Minigraph | 367 | 5 months ago | 1 | June 21, 2023 | 44 | mit | C | |||
Proof-of-concept seq-to-graph mapper and graph generator | ||||||||||
Sequenceserver | 259 | 1 | 3 months ago | 68 | October 05, 2023 | 91 | agpl-3.0 | JavaScript | ||
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!) | ||||||||||
Cogent3 | 79 | 2 | 3 months ago | 18 | September 22, 2023 | 35 | bsd-3-clause | Python | ||
Comparative Genomics Toolkit 3 | ||||||||||
Orthologr | 68 | 7 months ago | 8 | gpl-2.0 | R | |||||
Genome wide orthology inference and dNdS estimation |