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Search results for genomics sequence alignment
genomics
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sequence-alignment
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27 search results found
Biopython
⭐
3,918
Official git repository for Biopython (originally converted from CVS)
Minimap2
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1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Bwa
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1,282
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Jcvi
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650
Python library to facilitate genome assembly, annotation, and comparative genomics
Bwa Mem2
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645
The next version of bwa-mem
Biojava
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564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Minigraph
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367
Proof-of-concept seq-to-graph mapper and graph generator
Sequenceserver
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259
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Cogent3
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79
Comparative Genomics Toolkit 3
Orthologr
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68
Genome wide orthology inference and dNdS estimation
Arioc
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54
Arioc: GPU-accelerated DNA short-read alignment
Microbetrace
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53
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Unimap
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49
A fork of minimap2 optimized for assembly-to-reference alignment
Minimap2 Rs
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46
Rust bindings to minimap2 library
Pymsaviz
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41
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Awesome Sequencing Tech Papers
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26
A collection of publications on comparison of high-throughput sequencing technologies.
Rnaseq Pipeline
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18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Tredparse
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17
TREDPARSE: HLI Short Tandem Repeat (STR) caller
Pyfamsa
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17
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Chromeister
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16
A dotplot generator for large chromosomes
Pymuscle5
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12
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
Genomics Workspace
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11
Django website project for common sequence search tools.
Genome On Diet
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11
Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).
Positive Selection
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10
Scripts and procedures for detecting positively selected genes and codons in primates
Spacepile
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10
convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
Teacheng
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6
A Teaching Engine for Genomics
Pyopal
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6
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
Rdiamond
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5
Running DIAMOND2 through R
Microbetrace
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5
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
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1-27 of 27 search results
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