Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Mosdepth | 617 | 5 months ago | 49 | mit | Nim | |||||
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing | ||||||||||
Smudgeplot | 200 | 3 months ago | 19 | apache-2.0 | R | |||||
Inference of ploidy and heterozygosity structure using whole genome sequencing data | ||||||||||
Sequana | 136 | 8 | 4 months ago | 90 | December 06, 2023 | 12 | bsd-3-clause | Jupyter Notebook | ||
Sequana: a set of Snakemake NGS pipelines | ||||||||||
Glimpse | 110 | 4 months ago | 22 | mit | C++ | |||||
Low Coverage Calling of Genotypes | ||||||||||
Neat Genreads | 72 | 3 years ago | 25 | other | Python | |||||
NEAT read simulation tools | ||||||||||
Hg002_data_freeze_v1.0 | 54 | 2 years ago | 1 | |||||||
Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0) | ||||||||||
Cnview | 50 | 6 years ago | 3 | mit | R | |||||
Visualization and annotation of CNVs from population-scale whole-genome sequencing data | ||||||||||
Chanjo | 48 | 6 months ago | 40 | mit | Python | |||||
Chanjo provides a better way to analyze coverage data in clinical sequencing. | ||||||||||
Physalia Lcwgs | 43 | 7 months ago | HTML | |||||||
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022 | ||||||||||
Ploidyngs | 35 | a year ago | 1 | gpl-3.0 | HTML | |||||
Explore ploidy levels from NGS data alone |