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Search results for code coverage sequencing
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sequencing
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Mosdepth
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617
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Smudgeplot
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200
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Sequana
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136
Sequana: a set of Snakemake NGS pipelines
Glimpse
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110
Low Coverage Calling of Genotypes
Neat Genreads
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72
NEAT read simulation tools
Hg002_data_freeze_v1.0
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54
Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
Cnview
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50
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
Chanjo
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48
Chanjo provides a better way to analyze coverage data in clinical sequencing.
Physalia Lcwgs
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43
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
Ploidyngs
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35
Explore ploidy levels from NGS data alone
Wiggleplotr
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28
A small R package to make sequencing read coverage plots in R.
Accucopy
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13
Accucopy is a computational method that infers Allele-specific Copy Number alterations from low-coverage low-purity tumor sequencing Data.
Amplicon_coverage_plot
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12
interactive barplot for amplicon sequencing
Nucleosome_ctdna
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11
Inferring expressed genes by whole-genome sequencing of plasma DNA
Mdibl T3 Wgs Tutorial
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11
Bacterial Genome Assembly and Assessment
Plws
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11
Phylogenomics from Low-coverage Whole-genome Sequencing
Ngsphy
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9
NGSphy: phylogenomic simulation of next-generation sequencing data
Chanjo Report
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9
Report generator for Chanjo output
Fastq Info
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6
Calculate fastq reads and sequencing coverage
Adrsm
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5
Ancient DNA Read Simulator for Metagenomic
Cypiripi
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5
A tool for finding out the CYP2D6/CYP2D7 genotypes in the HTS reads
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