Kneaddata
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Artemis | 191 | a year ago | 25 | other | Java | |||||
| Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation | ||||||||||
| Kneaddata | 78 | a year ago | 10 | other | Python | |||||
| Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments. | ||||||||||
| Bigsdb | 53 | 3 months ago | 100 | other | Perl | |||||
| Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis. | ||||||||||
| Phenopolis | 32 | 3 years ago | 49 | mit | JavaScript | |||||
| An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data | ||||||||||
| Immunedb | 19 | 4 months ago | 32 | May 26, 2021 | 10 | other | Python | |||
| ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data | ||||||||||
| Plasmidseeker | 18 | 3 years ago | 1 | bsd-3-clause | Perl | |||||
| A k-mer based program for the identification of known plasmids from whole-genome sequencing reads | ||||||||||
| Seqspark | 16 | 5 years ago | 7 | apache-2.0 | Scala | |||||
| SEQSpark documentation | ||||||||||
| Mlst_check | 14 | 3 years ago | 13 | March 03, 2017 | 5 | gpl-3.0 | Perl | |||
| Multilocus sequence typing by blast using the schemes from PubMLST | ||||||||||
| Miracum Pipe | 14 | 5 months ago | 3 | agpl-3.0 | R | |||||
| Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting. | ||||||||||
| Haystac | 12 | a year ago | 16 | August 01, 2022 | 1 | mit | Python | |||
| Code repository for the HAYSTAC pipeline | ||||||||||
Alternatives To KneaddataSelect To Compare
Alternative Project Comparisons
Popular Sequencing Projects
Popular Database Projects
Popular Science Categories
Related Searches
Get A Weekly Email With Trending Projects For These Categories
No Spam. Unsubscribe easily at any time.
Python
Database
Sequencing