Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Somaticseq | 185 | 6 months ago | 1 | May 04, 2022 | 5 | bsd-2-clause | Python | |||
An ensemble approach to accurately detect somatic mutations using SomaticSeq | ||||||||||
Gcp Variant Transforms | 114 | 2 years ago | 110 | apache-2.0 | Python | |||||
GCP Variant Transforms | ||||||||||
Neopredpipe | 93 | 7 months ago | 5 | lgpl-3.0 | Python | |||||
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan. | ||||||||||
H3agwas | 89 | 5 months ago | 11 | other | Nextflow | |||||
GWAS Pipeline for H3Africa | ||||||||||
Pipeline Structural Variation | 87 | 3 years ago | 19 | other | Python | |||||
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data | ||||||||||
Selectiontools | 53 | a year ago | 16 | mit | Python | |||||
Pipeline to take VCF through to Selection Analysis. | ||||||||||
Admixturepipeline | 46 | 5 months ago | gpl-3.0 | Python | ||||||
A pipeline that accepts a VCF file to run through Admixture | ||||||||||
Germline Dna | 23 | a year ago | 2 | mit | wdl | |||||
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample | ||||||||||
Allbiotc2 | 22 | 10 years ago | 8 | Python | ||||||
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio. | ||||||||||
Sv Pipeline | 21 | 4 years ago | 8 | wdl | ||||||
Pipeline for structural variation detection in cohorts |