Deepg
DeepG, or 'Deep Genomics', is a R library which allows to train and apply deep neural networks on genomic datasets
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Deepvariant | 2,978 | 5 months ago | 8 | bsd-3-clause | Python | |||||
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
| Deeplearning Biology | 1,846 | a year ago | ||||||||
| A list of deep learning implementations in biology | ||||||||||
| Deep Review | 1,186 | 2 years ago | 422 | other | HTML | |||||
| A collaboratively written review paper on deep learning, genomics, and precision medicine | ||||||||||
| Healthcare_ml | 426 | a year ago | 2 | |||||||
| A curated list of ML|NLP resources for healthcare. | ||||||||||
| Enformer Pytorch | 359 |  | 1 | 5 months ago | 98 | November 03, 2023 | 6 | mit | Python | |
| Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch | ||||||||||
| Nucleotide Transformer | 305 | 3 months ago | 12 | other | Python | |||||
| 🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics | ||||||||||
| Dna Diffusion | 297 | 4 months ago | 1 | March 24, 2023 | 15 | mit | Jupyter Notebook | |||
| 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨 | ||||||||||
| Dragonn | 245 | 2 years ago | 15 | mit | Jupyter Notebook | |||||
| A toolkit to learn how to model and interpret regulatory sequence data using deep learning. | ||||||||||
| Janggu | 205 | 3 years ago | 19 | August 04, 2020 | gpl-3.0 | Jupyter Notebook | ||||
| Deep learning infrastructure for genomics | ||||||||||
| Deep Rules | 198 | 2 years ago | 65 | other | HTML | |||||
| Ten Quick Tips for Deep Learning in Biology | ||||||||||
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Deep Learning
R
Machine Learning
Genomics