Phyldiag
From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromosomes unbroken during evolution.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Hgtector | 87 | 9 months ago | 13 | bsd-3-clause | Python | |||||
| HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns. | ||||||||||
| Wgd | 74 | 8 months ago | 17 | gpl-3.0 | Python | |||||
| Python package and CLI for whole-genome duplication related analyses | ||||||||||
| Quota Alignment | 44 | 7 years ago | 4 | Python | ||||||
| Guided synteny alignment between duplicated genomes (within specified quota constraint) | ||||||||||
| Agora | 37 | a year ago | 3 | other | Python | |||||
| Algorithm For Gene Order Reconstruction in Ancestors | ||||||||||
| Ltrpred | 31 | 2 years ago | 6 | gpl-2.0 | R | |||||
| De novo annotation of young retrotransposons | ||||||||||
| Transposome | 30 | a year ago | 5 | mit | Perl | |||||
| A toolkit for annotation of transposable element families from unassembled sequence reads | ||||||||||
| Minemonics | 29 | 2 years ago | 88 | C++ | ||||||
| (Alpha Stage, work in progress) An open-source 3D virtual creature evolution simulator built in OGRE rendering engine in C++ to experiment with emergent gait-periodicity in evolved creatures on unknown terrain. | ||||||||||
| Tephra | 26 | a year ago | 14 | mit | Perl | |||||
| A tool for discovering transposable elements and describing patterns of genome evolution | ||||||||||
| Zombi | 19 | 2 years ago | 3 | Python | ||||||
| Evolution simulator with extinct lineages | ||||||||||
| Syllabus | 18 | 5 years ago | 6 | Shell | ||||||
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Python
Genome
Evolution