Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Hgtector | 87 | 7 months ago | 13 | bsd-3-clause | Python | |||||
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns. | ||||||||||
Wgd | 74 | 7 months ago | 17 | gpl-3.0 | Python | |||||
Python package and CLI for whole-genome duplication related analyses | ||||||||||
Quota Alignment | 44 | 7 years ago | 4 | Python | ||||||
Guided synteny alignment between duplicated genomes (within specified quota constraint) | ||||||||||
Agora | 37 | a year ago | 3 | other | Python | |||||
Algorithm For Gene Order Reconstruction in Ancestors | ||||||||||
Ltrpred | 31 | 2 years ago | 6 | gpl-2.0 | R | |||||
De novo annotation of young retrotransposons | ||||||||||
Transposome | 30 | a year ago | 5 | mit | Perl | |||||
A toolkit for annotation of transposable element families from unassembled sequence reads | ||||||||||
Minemonics | 29 | 2 years ago | 88 | C++ | ||||||
(Alpha Stage, work in progress) An open-source 3D virtual creature evolution simulator built in OGRE rendering engine in C++ to experiment with emergent gait-periodicity in evolved creatures on unknown terrain. | ||||||||||
Tephra | 26 | a year ago | 14 | mit | Perl | |||||
A tool for discovering transposable elements and describing patterns of genome evolution | ||||||||||
Zombi | 19 | a year ago | 3 | Python | ||||||
Evolution simulator with extinct lineages | ||||||||||
Syllabus | 18 | 5 years ago | 6 | Shell | ||||||