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Search results for vcf cancer genomics

cancer-genomics x

11 search results found

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Personal Cancer Genome Reporter (PCGR)

Somalier ⭐ 224

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Somaticseq ⭐ 185

An ensemble approach to accurately detect somatic mutations using SomaticSeq

Microassembly based somatic variant caller for NGS data

Sigprofilerextractor ⭐ 132

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Cancer Predisposition Sequencing Reporter (CPSR)

Sigprofilermatrixgeneratorr ⭐ 17

R wrapper for utilizing the SigProfilerMatrixGenerator framework

Variants2neoantigen ⭐ 14

a neoantigen calling pipeline begins from variants record file (MAF)

Sigprofilerextractorr ⭐ 11

An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Explore and filter structural variant calls from Lumpy and Delly VCF files

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