Awesome Open Source

Programming Languages

Search results for systems biology metabolic models

metabolic-models x

systems-biology x

15 search results found

Cobrapy ⭐ 414

COBRApy is a package for constraint-based modeling of metabolic networks.

Metagem ⭐ 155

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Yeast Gem ⭐ 80

The consensus GEM for Saccharomyces cerevisiae

Python package to study microbial communities using metabolic modeling.

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Isb_course_2022 ⭐ 22

Materials and presentation for the 2022 ISB Microbiome course.

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

Cobra.tutorials ⭐ 18

Repository of tutorials for The COBRA Toolbox

Autopacmen ⭐ 10

Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

Isb_course_2023 ⭐ 10

Materials and presentation for the 2023 ISB Microbiome course.

Advancesyntoolkit ⭐ 7

Toolkit for Modelling and Simulation of Gene Expressions and Metabolism

Physiofit ⭐ 5

Estimation of extracellular fluxes and growth rate

Yarrowia_lipolytica_w29 Gem ⭐ 5

Genome-scale model of Yarrowia lipolytica.

Memote M Capsulatus ⭐ 5

Genome-scale metabolic model of Methylococcus capsulatus.

Related Searches

Python Systems Biology (94)

Bioinformatics Systems Biology (53)

Systems Biology Sbml (50)

Python Metabolic Models (28)

Matlab Systems Biology (28)

Jupyter Notebook Systems Biology (24)

Bioinformatics Metabolic Models (16)

Genome Metabolic Models (16)

Metabolic Models Metabolism (15)

Html Systems Biology (13)

1-15 of 15 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.