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Search results for python metabolic models

metabolic-models x

18 search results found

Cobrapy ⭐ 414

COBRApy is a package for constraint-based modeling of metabolic networks.

Metagem ⭐ 155

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Yeast Gem ⭐ 80

The consensus GEM for Saccharomyces cerevisiae

Python package to study microbial communities using metabolic modeling.

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Curation and analysis of metabolic models

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

KEGG Module Evaluation Tool

Pgp_reconstruction ⭐ 10

Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models

Misosoup ⭐ 10

Minimal Supplying Community Search with constraint-based optimization methods.

Q2 Micom ⭐ 10

A Qiime plugin for MICOM.

SMETANA: a tool to analyse interactions in microbial communities

Pygenprop ⭐ 9

A python library for programmatic usage of EBI InterPro Genome Properties.

Advancesyntoolkit ⭐ 7

Toolkit for Modelling and Simulation of Gene Expressions and Metabolism

Reconstruct and handle many genome-scale metabolic models in ScrumPy

Microberx ⭐ 5

Physiofit ⭐ 5

Estimation of extracellular fluxes and growth rate

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