Cnapy Alternatives

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
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Alternatives To cnapy-org/CNApy
Project Name Stars Downloads Repos Using This Packages Using This Most Recent Commit Total Releases Latest Release Open Issues License Language
Developer-Y/cs-video-courses 62,887 0 0 over 2 years ago 0 0
List of Computer Science courses with video lectures.
plotly/dash 19,976 804 639 over 2 years ago 174 November 28, 2023 815 mit Python
Data Apps & Dashboards for Python. No JavaScript Required.
biopython/biopython 3,918 1,465 1,373 over 2 years ago 58 February 13, 2023 545 other Python
Official git repository for Biopython (originally converted from CVS)
google/deepvariant 2,978 0 0 over 2 years ago 0 8 bsd-3-clause Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
seandavi/awesome-single-cell 2,784 0 0 over 2 years ago 0 11 mit
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
danielecook/Awesome-Bioinformatics 2,505 0 0 almost 3 years ago 0 9
A curated list of awesome Bioinformatics libraries and software.
nextflow-io/nextflow 2,447 0 16 over 2 years ago 250 November 24, 2023 336 apache-2.0 Groovy
A DSL for data-driven computational pipelines
stephenturner/oneliners 1,705 0 0 almost 3 years ago 0 4
Useful bash one-liners for bioinformatics.
scverse/scanpy 1,682 29 440 over 2 years ago 77 October 31, 2023 546 bsd-3-clause Python
Single-cell analysis in Python. Scales to >1M cells.
lh3/minimap2 1,613 8 32 over 2 years ago 27 December 26, 2021 154 other C
A versatile pairwise aligner for genomic and spliced nucleotide sequences
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