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12 search results found

Metagem ⭐ 155

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

memote – the genome-scale metabolic model test suite

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Metage2metabo ⭐ 42

From annotated genomes to metabolic screening in large scale microbiotas

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gut microbes through the use of issues. Please note that pull requests will be automatically closed.

Pygenprop ⭐ 9

A python library for programmatic usage of EBI InterPro Genome Properties.

Yarrowia_lipolytica_w29 Gem ⭐ 5

Genome-scale model of Yarrowia lipolytica.

Memote M Capsulatus ⭐ 5

Genome-scale metabolic model of Methylococcus capsulatus.

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