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Search results for bioinformatics metabolic models
bioinformatics
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metabolic-models
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9 search results found
Cobrapy
⭐
414
COBRApy is a package for constraint-based modeling of metabolic networks.
Metagem
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155
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Metage2metabo
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42
From annotated genomes to metabolic screening in large scale microbiotas
Cnapy
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36
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Psamm
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26
Curation and analysis of metabolic models
Corda
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20
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Pgp_reconstruction
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10
Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
Autopacmen
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10
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
Advancesyntoolkit
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7
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
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