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10 search results found

Cobrapy ⭐ 414

COBRApy is a package for constraint-based modeling of metabolic networks.

Metagem ⭐ 155

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

Metabolicatlas ⭐ 18

Open source genome-scale metabolic models of human and model animals

Fluctuator ⭐ 13

R package to Import and Modify SVG (XML) Graphic Files

Pgp_reconstruction ⭐ 10

Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models

Pygenprop ⭐ 9

A python library for programmatic usage of EBI InterPro Genome Properties.

Memote M Capsulatus ⭐ 5

Genome-scale metabolic model of Methylococcus capsulatus.

Physiofit ⭐ 5

Estimation of extracellular fluxes and growth rate

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