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Search results for python metabolism

15 search results found

Cobrapy ⭐ 414

COBRApy is a package for constraint-based modeling of metabolic networks.

Metagem ⭐ 155

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Carveme ⭐ 117

CarveMe: genome-scale metabolic model reconstruction

Reframed ⭐ 47

ReFramed: metabolic modeling package

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

framed: a metabolic modeling package for python

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

Brendapyrser ⭐ 14

A Python parser for the BRENDA database

Pgp_reconstruction ⭐ 10

Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models

A python library for single-cell metabolism data analysis.

Reaction Inclusion by Parsimony and Transcript Distribution

Pygenprop ⭐ 9

A python library for programmatic usage of EBI InterPro Genome Properties.

Constraint-based modeling of metabolism using Mixed Integer Optimization

Wheatfspm ⭐ 7

WheatFspm is a Functional Structural Plant Model (FSPM) of wheat based on an innovative modelling framework for a better understanding of grass morphogenesis and C-N economy in interaction with environmental conditions.

Physiofit ⭐ 5

Estimation of extracellular fluxes and growth rate

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