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Cobratoolbox ⭐ 232

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Metagem ⭐ 155

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Yeast Gem ⭐ 80

The consensus GEM for Saccharomyces cerevisiae

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

Cobra.tutorials ⭐ 18

Repository of tutorials for The COBRA Toolbox

The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gut microbes through the use of issues. Please note that pull requests will be automatically closed.

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