Awesome Open Source

Programming Languages

Search results for pipeline dna

33 search results found

Galaxy ⭐ 1,211

Data intensive science for everyone.

UGENE is free open-source cross-platform bioinformatics software

3D de novo assembly (3D DNA) pipeline

Dna Seq Gatk Variant Calling ⭐ 138

This Snakemake pipeline implements the GATK best-practices workflow

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Animationdna ⭐ 75

Maya > Arnold > Nuke pipeline

Methpipe ⭐ 63

A pipeline for analyzing DNA methylation data from bisulfite sequencing.

Deepvariant ⭐ 38

Google's DeepVariant variant caller as a Nextflow pipeline

Hlatyping ⭐ 34

Precision HLA typing from next-generation sequencing data

De novo annotation of young retrotransposons

Nanostream Dataflow ⭐ 25

real-time stream processing of DNA nanopore sequencer reads with dataflow

Phylotar ⭐ 24

An automated pipeline for retrieving orthologous DNA sequences from GenBank in R

Germline Dna ⭐ 23

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).

Amrplusplus_v2 ⭐ 21

MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

Parallel read alignment and variant calling using MapReduce

Personal Identification Pipeline ⭐ 12

Automated Cell Toolkit

Deepvariant On Spark ⭐ 11

DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.

Illumina analysis pipeline

metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.

Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool

Neoantigen_calling_pipeline ⭐ 9

Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA

Dnaseq_pipeline ⭐ 8

Pipeline in place at the UGI for DNA level analysis

Seqprocess ⭐ 8

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package

Ansible Pipelines ⭐ 8

Run multiple Pipeline5 instances at once

Sentieon Dnascope Ml ⭐ 7

Sentieon DNAscope + Machine Learning Model

Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types

Epigenomics_cwl ⭐ 7

SCREW: A Reproducible Workflow for Single-Cell Epigenomics

Bcdatabaser ⭐ 6

A pipeline to create reference databases for arbitrary markers and taxonomic groups from NCBI data

Eager Gui ⭐ 5

The EAGER Pipeline

Serpentine ⭐ 5

Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.

Related Searches

Python Pipeline (4,255)

Javascript Pipeline (1,369)

Pipeline Jenkins (1,150)

Shell Pipeline (1,143)

Docker Pipeline (1,018)

Jupyter Notebook Pipeline (976)

Java Pipeline (868)

Python Dna (722)

Pipeline Genome (479)

C Plus Plus Pipeline (430)

1-33 of 33 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.