Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

Metabar

metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
Stars
9
License
No license specified
Open Issues
8
Most Recent Commit
a year ago
Programming Language
HTML
Categories
Site
Repo
Alternatives To Metabar
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Biopython3,918pypi biopython} Downloads1,4651,3733 months ago58February 13, 2023545otherPython
Official git repository for Biopython (originally converted from CVS)
Deepvariant2,978
4 months ago8bsd-3-clausePython
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk1,5762a month ago46March 16, 20231,299otherJava
Official code repository for GATK versions 4 and up
Galaxy1,211pypi galaxy-util} Downloads2233 months ago30December 08, 20232,169otherPython
Data intensive science for everyone.
Khmer729pypi khmer} Downloads2172 years ago18December 15, 2021341otherPython
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Nucleus675pypi google-nucleus} Downloads23 years ago18August 31, 20211otherC++
Python and C++ code for reading and writing genomics data.
Poly620
3 months ago32mitGo
A Go package for engineering organisms.
Dnafeaturesviewer500pypi dna-features-viewer} Downloads226 months ago30November 01, 202331mitPython
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Pyfaidx427pypi pyfaidx} Downloads1031193 months ago86September 22, 202314otherPython
Efficient pythonic random access to fasta subsequences
Bismark335
7 months ago2gpl-3.0HTML
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Alternatives To Metabar
Select To Compare
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58most recent commit 3 months agopypi biopython} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Khmer ⭐ 729
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
dependent packages 7total releases 18most recent commit 2 years agopypi khmer} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18most recent commit 3 years agopypi google-nucleus} Downloads
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30most recent commit 6 months agopypi dna-features-viewer} Downloads
Pyfaidx ⭐ 427
Efficient pythonic random access to fasta subsequences
dependent packages 119total releases 86most recent commit 3 months agopypi pyfaidx} Downloads


Suggest An Alternative To metabaR
Alternative Project Comparisons
Metabar vs Biopython
Metabar vs Deepvariant
Metabar vs Gatk
Metabar vs Galaxy
Metabar vs Khmer
Metabar vs Nucleus
Metabar vs Poly
Metabar vs Dnafeaturesviewer
Metabar vs Pyfaidx
Metabar vs Bismark
Popular Bioinformatics Projects
Popular Dna Projects
Popular Data Processing Categories
Jupyter Notebook
Dataset
Sql
Validation
Pipeline
Translation
Data Science
Classification
Transaction
Scraper
Related Searches
R Bioinformatics
R Pipeline
Pipeline Bioinformatics
R Dna
Bioinformatics Dna
Pipeline Dna
R Data Cleaning
R Bioinformatics Pipeline
R Metabarcoding
Pipeline Metabarcoding

Get A Weekly Email With Trending Projects For These Categories
No Spam. Unsubscribe easily at any time.
Html
Pipeline
Bioinformatics
Dna
Data Cleaning
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.