Awesome Open Source

Programming Languages

Search results for pacbio

47 search results found

Sniffles ⭐ 479

Structural variation caller using third generation sequencing

Hifiasm ⭐ 443

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Nextdenovo ⭐ 306

Fast and accurate de novo assembler for long reads

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

Ampliseq ⭐ 141

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Sequana ⭐ 136

Sequana: a set of Snakemake NGS pipelines

Winnowmap ⭐ 131

Long read / genome alignment software

Technology agnostic long read analysis pipeline for transcriptomes

Isoquant ⭐ 98

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Smartdenovo ⭐ 90

Ultra-fast de novo assembler using long noisy reads

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

Long Reads Annotation pipeline

An accurate and ultra-fast hybrid genome assembler

Transcriptclean ⭐ 57

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

Long-reads Gap-free Chromosome-scale Assembler

Close assembly gaps using long-reads at high accuracy.

Swan_vis ⭐ 43

A Python library to visualize and analyze long-read transcriptomes

ClairS - a deep-learning method for long-read somatic small variant calling

A fast tool for hybrid genome assembly of long and short reads

Lordfast ⭐ 31

Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.

Awesome Sequencing Tech Papers ⭐ 26

A collection of publications on comparison of high-throughput sequencing technologies.

An all-in-one genome-centric metagenomics workflow using long reads

Ngs Preprocess ⭐ 23

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Lrbinner ⭐ 22

LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.

Predict plasmids from uncorrected long read data

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

Isotools ⭐ 15

IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

Minorseq ⭐ 14

Minor Variant Calling and Phasing Tools

STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.

A straightforward and complete next-generation sequencing read simulator

Cliquesnv ⭐ 13

An HLA star-calling tool for PacBio HiFi data types

Coronavirus (SARS-Cov-2) sequencing analysis

Pacbio Tools ⭐ 8

Tools for PacBio Sequel data analysis

Pb Starphase ⭐ 7

A phase-aware pharmacogenomic diplotyper for PacBio datasets

A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

Quality control plotting for long reads

A fully integrated K-mer Informed Toolkit for Bioinformatics

Improving long-read barcode-variant mapping using multiple sequence alignment.

Related Searches

Bioinformatics Pacbio (23)

Python Pacbio (21)

Nanopore Pacbio (19)

Long Reads Pacbio (18)

Assembly Pacbio (17)

Genome Pacbio (16)

1-47 of 47 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.