Project Name	Stars	Most Recent Commit	Open Issues	License	Language
Gencore	103	6 months ago	38	mit	C++
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
Consent	40	3 years ago	14	agpl-3.0	C++
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Ococo	39	5 years ago	9	mit	C++
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
Tracespipe	16	10 months ago		gpl-3.0	Shell
Reconstruction and analysis of viral and host genomes at multi-organ level
Cliquesnv	13	a year ago	8	mit	Java

Jovian	12	3 years ago	20	agpl-3.0	Python
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Quasitools	6	4 years ago	4	apache-2.0	Python
Quasitools is a collection of tools for analysing viral quasispecies data.

Alternatives To Cliquesnv

Select To Compare

Gencore ⭐ 103

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

most recent commit 6 months ago

Consent ⭐ 40

Scalable long read self-correction and assembly polishing with multiple sequence alignment

most recent commit 3 years ago

Ococo ⭐ 39

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

most recent commit 5 years ago

Tracespipe ⭐ 16

Reconstruction and analysis of viral and host genomes at multi-organ level

most recent commit 10 months ago

Cliquesnv ⭐ 13

most recent commit a year ago

Jovian ⭐ 12

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

most recent commit 3 years ago

Quasitools ⭐ 6

Quasitools is a collection of tools for analysing viral quasispecies data.

most recent commit 4 years ago

Suggest An Alternative To CliqueSNV

Alternative Project Comparisons

Cliquesnv vs Gencore

Cliquesnv vs Consent

Cliquesnv vs Ococo

Cliquesnv vs Tracespipe

Cliquesnv vs Jovian

Cliquesnv vs Quasitools

Popular Consensus Projects

Etcd ⭐ 46,320

Distributed reliable key-value store for the most critical data of a distributed system

dependent packages 2,948total releases 403latest release December 07, 2023most recent commit 3 days ago

Fabric ⭐ 15,045

Hyperledger Fabric is an enterprise-grade permissioned distributed ledger framework for developing solutions and applications. Its modular and versatile design satisfies a broad range of industry use cases. It offers a unique approach to consensus that enables performance at scale while preserving privacy.

dependent packages 161total releases 255latest release March 22, 2022most recent commit 3 months ago

Rqlite ⭐ 14,492

The lightweight, distributed relational database built on SQLite

dependent packages 3total releases 42latest release April 14, 2021most recent commit 3 months ago

Tikv ⭐ 14,485

Distributed transactional key-value database, originally created to complement TiDB

most recent commit 4 days ago

Zookeeper ⭐ 11,766

Apache ZooKeeper

total releases 1latest release December 18, 2019most recent commit 3 months ago

Popular Ngs Projects

Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 4 months ago

Fastp ⭐ 1,602

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.

total releases 1latest release December 15, 2021most recent commit 6 months ago

Gatk ⭐ 1,576

Official code repository for GATK versions 4 and up

dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago

Ngs ⭐ 1,252

Next Generation Shell (NGS)

most recent commit 3 months ago

Galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months ago

Popular Data Storage Categories